David E. Breen: Publications List

Subject Areas

• Cloth Modeling and Design
• Geometric Modeling
• Biomedical Image/Video Informatics
• Biological Simulation and Self-Organization
• Level Set Models
• Visualization
• Volume Segmentation
• Augmented Reality
• Computer Animation

Publications in Chronological Order

David E. Breen @ Google Scholar

Cloth Modeling and Design

• L.K. Maharaj, C. Amanatides, G. Dion, V. Shapiro and D.E. Breen, "Topology, Integrity, and Stability Analysis of Weft-knitted Textiles," Textile Research Journal, Vol. 95, No. 19-20, pp. 663-685, October 2025. (Abstract).

• C. Sun and D. Breen, "Designing Flow Properties in Weft-Knitted Fabrics With Yarn Topology Graphs," Proceedings of World Conference of the Association of Universities for Textiles, June 2025. (Abstract).

• O. Kyzymchuk, Y. Kyosev, D. Breen, L. Melnyk, S. Arabuli, B. Hagewiesche and I. Peraza, "Compression Covers for Limbs - Towards Automatic Analysis of the Profile Geometry of Limbs," M. Tokarska M. and Barburski (Eds.), Textile Futures: Engineering Advanced Materials for a Changing World, Lodz University of Technology Press Monograph No. 2583 (Proc. InnovaTex Conference) (Lodz, Poland, January 2025) pp. 61-87. (Abstract).

• D. Breen, P. Wadekar, C. Amanatides, G. Dion and R. Kamien, "Geometric and Mechanical Modeling of Weft-Knitted Fabrics Using Helicoid Scaffolds," Proceedings of International Conference on Structure and Structural Mechanics of Textile Fabrics, pp. 1-15, December 2024. (Abstract).

• D.E. Breen and J. McCann, "Special Issue Editorial: Computational Modeling, Design and Fabrication for Textiles," Computer-Aided Design, Vol. 169, p. 103684, April 2024.

• L. Kapllani, C. Amanatides, G. Dion and D.E. Breen, "Loop Order Analysis of Weft-Knitted Textiles," Textiles, Vol. 2, No. 2, pp. 275-295, May 2022. (Abstract).

• L. Kapllani, C. Amanatides, G. Dion, V. Shapiro and D.E. Breen, "TopoKnit : A Process-Oriented Representation for Modeling the Topology of Yarns in Weft-Knitted Textiles," Graphical Models, Vol. 118, Paper 101114, October 2021. (Abstract).

• P. Wadekar, C. Amanatides, L. Kapllani, G. Dion, R.D. Kamien and D.E. Breen, "Geometric Modeling of Complex Knitting Stitches Using a Bicontinuous Surface and its Offsets," Computer Aided Geometric Design, Vol. 89, Paper 102024, August 2021. (Abstract).

• P. Wadekar, V. Perumal, G. Dion, A. Kontsos and D.E. Breen, "An Optimized Yarn-level Geometric Model for Finite Element Analysis of Weft-knitted Fabrics," Computer Aided Geometric Design, Vol. 80, p. 101883, June 2020. (Abstract).

• P. Wadekar, P. Goel, C. Amanatides, G. Dion, R.D. Kamien and D.E. Breen, "Geometric Modeling of Knitted Fabrics Using Helicoid Scaffolds," Journal of Engineered Fibers and Fabrics, Vol. 15, pp. 1-15, April 2020. (Abstract).

• Y. Li, D.E. Breen, J. McCann and J. Hodgins, "Algorithmic Quilting Pattern Generation for Pieced Quilts," Proceedings of Graphics Interface, May 2019, Paper 13. (Abstract).

• E. Tekerek, D. Liu, B.J. Wisner, M. Matthew, D. Breen and A. Kontsos, "Integrated Investigation of the Role of 3D Architecture in the Mechanical Behavior of Knitted Textiles," Proceedings of 18th European Conference on Composite Materials, June 2018. (Abstract).

• D. Liu, B. Shakibajahromi, G. Dion, D. Breen and A. Kontsos, "A Computational Approach to Model Interfacial Effects on the Mechanical Behavior of Knitted Textiles," Journal of Applied Mechanics, Vol. 85, No. 4, February 2018, paper JAM-17-1584. (Abstract).

• D. Liu, D. Christie, B. Shakibajahromi, C. Knittel, N. Castaneda, D. Breen, G. Dion, and A. Kontsos, "On the Role of Material Architecture in the Mechanical Behavior of Knitted Textiles," International Journal of Solids and Structures, Vol. 109, March 2017, pp. 101-111. (Abstract).

• H.-S. Ko and D.E. Breen (eds.), Clothing Simulation and Animation, SIGGRAPH 2003 Course #29 Notes, July 2003. (Abstract).

• M. Aono, D.E. Breen and M.J. Wozny, "Modeling Methods for the Design of 3D Broadcloth Composite Parts," Computer-Aided Design, Vol. 33, No. 13, November 2001, pp. 989-1007. (Abstract).

• D.H. House and D.E. Breen (eds.), Cloth Modeling and Animation, AK Peters/CRC Press, 2000.

• D.E. Breen, "Computer Graphics in Textiles and Apparel Modeling," guest editor introduction, IEEE Computer Graphics and Applications, Vol. 16, No. 5, pp. 26-27, September 1996.

• M. Aono, P. Denti, D.E. Breen and M. Wozny, "Fitting a Woven Cloth Model to a Curved Surface: Dart Insertion," IEEE Computer Graphics and Applications, Vol. 16, No. 5, pp. 60-70, September 1996. (Abstract).

• D.H. House, R.W. DeVaul and D.E. Breen, "Towards Simulating Cloth Dynamics Using Interacting Particles," International Journal of Clothing Science and Technology, Vol. 8, No. 3, pp. 75-94, 1996. (Abstract).

• D.E. Breen, D.H. House and M.J. Wozny, "A Particle-Based Model for Simulating the Draping Behavior of Woven Cloth," Textile Research Journal, Vol. 64, No. 11, November 1994, pp. 663-685. (Abstract).

• D.E. Breen, D.H. House and M.J. Wozny, "Predicting the Drape of Woven Cloth Using Interacting Particles," Proceedings of SIGGRAPH '94 Conference, (Orlando, FL, July 1994) pp. 365-372. (Abstract).

• M. Aono, D.E. Breen and M.J. Wozny, "Fitting a Woven Cloth Model to a Curved Surface: Mapping Algorithms," Computer-Aided Design, Vol. 26, No. 4, April 1994, pp. 278-292. (Abstract).

• D.E. Breen "A Particle-Based Model for Simulating the Draping Behavior of Woven Cloth," Ph.D. Thesis, Rensselaer Polytechnic Institute, Troy, NY, April 1993. RPI CAT technical report # 93011. (Abstract).

• M. Aono, D.E. Breen and M.J. Wozny, "A Computer-Aided Broadcloth Composite Layout Design System," Geometric Modeling for Product Realization, North-Holland, 1992, pp. 223-250. (Abstract).

• D.H. House, D.E. Breen and P.H. Getto, "On the Dynamic Simulation of Physically-Based Particle-System Models," Proceedings of Third Eurographics Workshop on Animation and Simulation, Cambridge, UK, September 1992. (Abstract).

• D.E. Breen, D.H. House and P.H. Getto, "A Physically-Based Particle Model of Woven Cloth," The Visual Computer, Vol. 8, No. 5-6, June 1992, pp. 264-277. (Abstract).

• D.E. Breen, D.H. House and P.H. Getto, "A Particle-Based Computational Model of Cloth Draping Behavior," Scientific Visualization of Physical Phenomena (Proc. CGI '91), (Cambridge, MA, June 1991) pp. 113-134. (Abstract).

• D. House and D. Breen, "Particles: A Naturally Parallel Approach to Modeling," Proceedings of 3rd Symposium on the Frontiers of Massively Parallel Computation, October 1990, pp. 150-153. (Abstract).

Geometric Modeling

• B. Shakibajahromi, E. Kim, J. Greenberg and D.E. Breen, "Metadata and 3D Shape Similarity: Establishing a Ground Truth Dataset," Proceedings of International Conference on Metadata and Semantics Research, December 2025. (Abstract).

• J. Pepper and D.E. Breen, "An Epithelium-Inspired Deformation Modeling Framework for 4D Sheets," Proceedings of International Symposium on Visual Computing Part 1, pp. 111-124, October 2024. (Abstract).

• B. Shakibajahromi, E. Kim, D.E. Breen, "RIMeshGNN: A Rotation-Invariant Graph Neural Network for Mesh Classification," Proceedings of IEEE/CVF Winter Conference on Applications of Computer Vision, pp. 3150-3160, January 2024. (Abstract).

• J. Pepper and D.E. Breen, "Design and Simulation of Multi-Tiered 4D Printed Objects," Computer-Aided Design and Applications, Vol. 20, No. 3, pp. 489-506, September 2022. (Abstract).

• J. Gu, D.E. Breen, J. Hu, L. Zhu, Y. Tao, T. Van de Zande, G. Wang, Y.J. Zhang and L. Yao, "Geodesy: Self-rising 2.5D Tiles by Printing along 2D Geodesic Closed Path," Proceedings of CHI Conference on Human Factors in Computing Systems, May 2019, Paper No. 37. (Abstract).

• M. Eyiyurekli and D. Breen, "Detail-Preserving Level Set Surface Editing and Geometric Texture Transfer," Graphical Models, Vol. 93, September 2017, pp. 39-52. (Abstract).

• M. Eyiyurekli and D. Breen, "Data Structures for Interactive High Resolution Level-Set Surface Editing," Proceedings of Graphics Interface, May 2011, pp. 95-102. (Abstract).

• M. Eyiyurekli and D. Breen, "Interactive Free-Form Level-Set Surface-Editing Operators,'' Computers & Graphics, Vol. 34 No. 5, 2010, pp. 621-638. (Abstract).

• M. Eyiyurekli, C. Grimm and D. Breen, "Editing Level-Set Models with Sketched Curves," Proceedings of Eurographics/ACM Symposium on Sketch-Based Interfaces and Modeling, August 2009, pp. 45-52. (Abstract).

• M. Eyiyurekli and D. Breen, "Localized Editing of Catmull-Rom Splines," Computer-Aided Design and Applications, Vol. 6, No. 3, June 2009, pp. 307-316. (Abstract).

• K. Swanson, K. Brakke and D. Breen, "Physics-based Surface Modeling using Quasi-Static Liquids," Computer-Aided Design and Applications, Vol. 6, No. 6, June 2009, pp. 759-768. (Abstract).

• L. Bai and D. Breen, "Calculating Center of Mass in an Unbounded 2D Environment," Journal of Graphics Tools, Vol. 13, No. 4, December 2008, pp. 53-60. (Abstract).

• K.W. Swanson, K.A. Brakke and D. Breen, "Temporal Computational Objects: A Process for Dynamic Surface Generation" Advances in Visual Computing (Proc. International Symposium on Visual Computing Part II), LNCS 5359, December 2008, pp. 959 - 969. (Abstract).

• J. Beltowska, K. Museth and D. Breen, "Investigations of Tensor Voting Modeling," Communications Proceedings of 16th International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision, February 2008, pp. 55 - 62. (Abstract).

• I. Braude, J. Marker, K. Museth, J. Nissanov, D. Breen, "Contour-Based Surface Reconstruction using MPU Implicit Models," Graphical Models, Vol. 69, No. 2, March 2007, pp. 139-157. (Abstract).

• J. Marker, I. Braude, K. Museth, D. Breen, "Contour-Based Surface Reconstruction using Implicit Curve Fitting, and Distance Field Filtering and Interpolation," Proceedings of International Workshop on Volume Graphics, July 2006, pp. 95-102. (Abstract).

• K. Museth, D.E. Breen, R.T. Whitaker, S. Mauch and D. Johnson, "Algorithms for Interactive Editing of Level Set Models," Computer Graphics Forum, Vol. 24, No. 4, December 2005, pp. 821-841. (Abstract).

• O. Nilsson, D. Breen and K. Museth, "Surface Reconstruction Via Contour Metamorphosis: An Eulerian Approach With Lagrangian Particle Tracking," Proceedings of IEEE Visualization 2005 Conference, October 2005, pp. 407-414. (Abstract).

• C. Schroeder, D. Breen, C. Cera and W. Regli, "Stochastic Microgeometry for Displacement Mapping," Proceedings of Shape Modeling International 2005 Conference, June 2005, pp. 164-173. (Abstract).

• K. Museth, R.T. Whitaker and D.E. Breen, "Editing Geometric Models," Geometric Level Set Methods in Imaging, Vision and Graphics, S. Osher and N Paragios (eds.), Springer, New York, Chapter 23, 2003, pp. 441-460. (Abstract).

• K. Museth, D.E. Breen, R.T. Whitaker and A.H. Barr, "Level Set Surface Editing Operators," ACM Transactions on Graphics (Proc. SIGGRAPH), Vol. 21, No. 3, July 2002, pp. 330-338. (Abstract).

• M. Gavriliu, J. Carranza, D. Breen and A. Barr, "Fast Extraction of Adaptive Multiresolution Meshes with Guaranteed Properties from Volumetric Data," Proceedings of IEEE Visualization 2001 Conference, October 2001, pp. 295-302. (Abstract).

• Z. Wood, M. Desbrun, P. Schröder and D. Breen, "Semi-Regular Mesh Extraction From Volumes," Proceedings of IEEE Visualization 2000 Conference, October 2000, pp. 275-282. (Abstract).

• D.E. Breen, S. Mauch and R.T. Whitaker, "3D Scan Conversion of CSG Models into Distance, Closest-Point and Colour Volumes," Volume Graphics, M. Chen, A.E. Kaufman, R. Yagel (eds.), Springer, London, Chapter 8, 2000, pp. 135-158. (Abstract).

• D.E. Breen and S. Mauch, "Generating Shaded Offset Surfaces with Distance, Closest-Point and Color Volumes," Proceedings of International Workshop on Volume Graphics, March 1999, pp. 307-320. (Abstract).

• D.E. Breen, S. Mauch and R.T. Whitaker, "3D Scan Conversion of CSG Models Into Distance Volumes," Proceedings of 1998 Symposium on Volume Visualization, ACM SIGGRAPH, October 1998, pp. 7-14. (Abstract).

• D.E. Breen, "Constructive Cubes: CSG Evaluation For Display Using 3-D Scalar Data Sets," Proceedings of Eurographics '91 Conference, pp. 127-142. (Abstract).

• D.E. Breen, "Creation and Smooth-Shading of Steiner Patch Tessellations," Proceedings of 1986 Fall Joint Computer Conference, pp. 931-940. (Abstract).

• D.E. Breen, "Creation and Smooth-Shading of Steiner Patch Tessellations," M.S. Thesis, Rensselaer Polytechnic Institute, Troy, NY, August 1985. RPI CAT technical report # 85016. (Abstract).

Biomedical Image/Video Informatics

• J. Pepper, Z. Siapno, J. Furst, F. Uribe-Romo, D. Breen and J. Greenberg, "From Analog Records to Computational Research Data: Building the AI-Ready Lab Notebook," Proceedings of IEEE Workshop on Computational Archival Science, December 2025. (Abstract).

• J. Pepper, E. Jones, X. Zhao, J. Furst, K. Langlois, F. Uribe-Romo, D. Breen and J. Greenberg, "AI-Ready Data: Knowledge Extraction from Archival Lab Notebooks," Proceedings of IEEE International Conference on Big Data, pp. 2489-2495, December 2024. (Abstract).

• K. Karnani, J. Pepper, Y. Bakiş, X. Wang, H. Bart Jr., D. Breen and J. Greenberg, "Computational Metadata Generation Methods for Biological Specimen Image Collections," International Journal on Digital Libraries, Vol. 25, pp. 157-174, June 2024. (Abstract).

• M.A. Balk et al., "A FAIR and Modular Image-based Workflow for Knowledge Discovery in the Emerging Field of Imageomics," Methods in Ecology and Evolution, Vol. 15, No. 6, pp. 1129-1145, June 2024. (Abstract).

• D.E. Breen, A. Senin, A. Levere, J. Pepper and J. Greenberg, "Specimen Outlining: A Computational Archival Science Approach," Proceedings of IEEE International Conference on Big Data, pp. 2004-2009, December 2023. (Abstract).

• J. Pepper, A. Senin, D. Jebbia, D. Breen and J. Greenberg, "Metadata Verification: A Workflow for Computational Archival Science," Proceedings of IEEE International Conference on Big Data, pp. 2565-2571, December 2022. (Abstract).

• S. Grimes, M.D. Zarella, F.U. Garcia and D.E. Breen, "An Agent-based Approach to Predicting Lymph Node Metastasis Status in Breast Cancer," Proceedings of IEEE International Conference on Bioinformatics and Biomedicine, pp. 1315-1319, December 2021. (Abstract).

• W. Tan, D.E. Breen, F.U. Garcia and M.D. Zarella, "Automated Classification Map Generation of Prostate Cancer using Deep Learning," Proceedings of IEEE International Conference on Bioinformatics and Biomedicine, pp. 2064-2071, December 2021. (Abstract).

• J. Pepper, J. Greenberg, X. Wang, Y. Bakiş, H. Bart Jr., D. Breen, "Automatic Metadata Generation for Fish Specimen Image Collections," Proceedings of ACM/IEEE-CS Joint Conference on Digital Libraries, pp. 31-40, September 2021. (Abstract).

• D.E. Breen, L. Sui, L. Bai, F. Jülicher and C. Dahmann, "Cell-Level 3D Reconstruction and Quantification of the Drosophila Wing Imaginal Disc," International Journal of Bioinformatics Research and Applications, Vol. 15, No. 2, May 2019, pp. 174-189. (Abstract).

• M.D. Zarella, M.R. Quaschnick, D.E. Breen and F.U. Garcia, "Estimation of Fine-Scale Histologic Features at Low Magnification," Archives of Pathology & Laboratory Medicine, Vol. 142, No. 11, November 2018, pp. 1394-1402. (Abstract).

• G. Nandakumar, S. Maharaj, D.E. Breen, F.U. Garcia and M.D. Zarella, "Image Processing to Extend Effective OCT Penetration Depth in Tissue," Medical Imaging 2018: Digital Pathology, SPIE Proceedings, Vol. 10581, paper 105817, March 2018. (Abstract).

• M.D. Zarella, F.U. Garcia and D.E. Breen, "A Template Matching Model for Nuclear Segmentation in Digital Images of H&E Stained Slides," Proceedings of 9th International Conference on Bioinformatics and Biomedical Technology, May 2017, pp. 11-15. (Abstract).

• M.D. Zarella, C. Yeoh, D.E. Breen and F.U. Garcia, "An Alternative Reference Space for H&E Color Normalization," PLoS ONE, Vol. 12, No. 3, March 2017, p. e0174489. (Abstract).

• M.D. Zarella, D.E. Breen, M.A. Reza, A. Milutinovic, and F.U. Garcia, "Lymph Node Metastasis Status in Breast Carcinoma Can Be Predicted via Image Analysis of Tumor Histology," Analytical and Quantitative Cytology and Histology, Vol. 37, No. 5, October 2015, pp. 273-285. (Abstract).

• M.D. Zarella, D.E. Breen, A. Plagov and F.U. Garcia, "An Optimized Color Transformation for the Analysis of Digital Images of Hematoxylin & Eosin Stained Slides," Journal of Pathology Informatics, Vol. 6, No. 1, 2015, p. 33. (Abstract).

• M.A. Reza, S.D. Mhatre, J.C. Morrison, S. Utreja, A.J. Saunders, D.E. Breen and D.R. Marenda, "Automated Analysis of Courtship Suppression Learning and Memory in Drosophila Melanogaster," Fly, Vol. 7, No. 2, June 2013, pp. 105-111. (Abstract).

• L. Bai, T. Widmann, F. Jülicher, C. Dahmann and D.E. Breen, "3D Surface Reconstruction and Visualization of the Drosophila Wing Imaginal Disc at Cellular Resolution," Proceedings of SPIE-IS&T Conference on Electronic Imaging, Volume 8654, Article 86540D, February 2013. (Abstract).

• D.E. Breen, T. Widmann, L. Bai, F. Jülicher and C. Dahmann, "Epithelial Cell Reconstruction and Visualization of the Developing Drosophila Wing Imaginal Disc," Proceedings of IEEE Symposium on Biological Data Visualization, October 2012, pp. 77 - 84. (Abstract).

• M.A. Reza, J. Marker, S. Mhatre, A. Saunders, D. Marenda and D. Breen, "Video Analysis Algorithms for Automated Categorization of Fly Behaviors,'' Proceedings of International Symposium on Visual Computing, Part II, LNCS 7432, July 2012, pp. 229 - 241. (Abstract).

• S. Petushi, J. Zhang, A. Milutinovic, D.E. Breen, F.U. Garcia, "Image-Based Histologic Grade Estimation Using Stochastic Geometry Analysis," Medical Imaging 2011: Computer-Aided Diagnosis, SPIE Proceedings, Vol. 7963, Article 79633E, March 2011. (Abstract).

• S. Petushi, J. Marker, J. Zhang, W. Zhu, D. Breen, C. Chen, X. Lin and F.U. Garcia, "A Visual Analytics System for Breast Tumor Evaluation," Analytical and Quantitative Cytology and Histology, Vol. 30, No. 5, pp. 279-290, October 2008. (Abstract).

• J.Z. Zhang, S. Petushi, W.C. Regli, F.U. Garcia and D.E. Breen, "A Study of Shape Distributions for Estimating Histologic Grade," Proceedings of 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, August 2008, pp. 1200-1205. (Abstract).

Biological Simulation and Self-Organization

• S. Grimes and D.E. Breen, "A Multi-Agent Approach to Binary Classification Using Swarm Intelligence," Future Internet, Vol. 15, No. 1, paper 36, January 2023. (Abstract).

• S. Grimes, M.D. Zarella, F.U. Garcia and D.E. Breen, "An Agent-based Approach to Predicting Lymph Node Metastasis Status in Breast Cancer," Proceedings of IEEE International Conference on Bioinformatics and Biomedicine, pp. 1315-1319, December 2021. (Abstract).

• S. Grimes and D.E. Breen, "Woc-Bots: An Agent-Based Approach to Decision-Making," Applied Sciences, Vol. 9, No. 21, p. 4653, November 2019. (Abstract).

• S. Grimes, L. Bai, A.W.E. McDonald, and D.E. Breen, "Directing Chemotaxis-Based Spatial Self-Organization via Biased, Random Initial Conditions," International Journal of Parallel, Emergent and Distributed Systems, Vol. 34, No. 4, April 2019, pp. 380-399. (Abstract).

• A.W.E. McDonald, S. Grimes and D.E. Breen, "Ortus: An Emotion-Driven Approach to (Artificial) Biological Intelligence," Proceedings of 14th European Conference on Artificial Life, September 2017, pp. 537-544. (Abstract).

• L. Bai, R. Gilmore and D.E. Breen, "Predicting Spatial Self-Organization with Statistical Moments," Proceedings of Spatial Computing Workshop of the AAMAS Conference, Article 2, May 2014. (Abstract).

• L. Bai, M. Eyiyurekli, P.I. Lelkes and D.E. Breen, "Self-Organized Sorting of Heterotypic Agents Via a Chemotaxis Paradigm," Science of Computer Programming, Vol. 78, No. 5, pp. 594-611, May 2013. (Abstract).

• L. Bai and D. Breen, "Chemotaxis-Inspired Cellular Primitives for Self-Organizing Shape Formation," R. Doursat, H. Sayama, O. Michel (eds.), Morphogenetic Engineering: Toward Programmable Complex Systems, Springer, Berlin, Chapter 9, 2012, pp. 209-237. (Abstract).

• M. Eyiyurekli, L. Bai, P. Lelkes and D. Breen, "Chemotaxis-based Sorting of Self-Organizing Heterotypic Agents,'' Proceedings of 25th ACM Symposium on Applied Computing, March 2010, pp. 1315-1322. (Abstract).

• L. Bai, M. Eyiyurekli and D. Breen, "An Emergent System for Self-Aligning and Self-Organizing Shape Primitives," Proceedings of Second IEEE International Conference on Self-Adaptive and Self-Organizing Systems, October 2008, pp. 445-454. (Abstract).

• M. Eyiyurekli, P. Manley, P. Lelkes and D. Breen, "A Computational Model of Chemotaxis-based Cell Aggregation," BioSystems, Vol. 93, No. 3, pp. 226-239, September 2008. (Abstract).

• L. Bai, M. Eyiyurekli and D. Breen, "Automated Shape Composition Based on Cell Biology and Distributed Genetic Programming," Proceedings of Genetic and Evolutionary Computation Conference, July 2008, pp. 1179-1186. (Abstract).

• L. Bai, M. Eyiyurekli and D. Breen, "Self-Organizing Primitives for Automated Shape Composition," Proceedings of Shape Modeling International 2008 Conference, June 2008, pp. 147-154. (Abstract).

• M. Eyiyurekli, P. Lelkes and D. Breen, "Simulation of Chemotaxis-based Sorting of Heterotypic Cell Populations," Proceedings of IEEE / NIH BISTI Life Science Systems & Applications Workshop, November 2007, pp. 47-50. (Abstract).

• M. Eyiyurekli, P. Lelkes and D. Breen, "A Computational System for Investigating Chemotaxis-Based Cell Aggregation," Proceedings of European Conference on Artificial Life, September 2007, pp. 1034-1049. (Abstract).

• D. House and D. Breen, "Particles as Modeling Primitives for Surgical Simulation," Proceedings of 11th Annual International IEEE Engineering in Medicine & Biology Conference, November 1989, pp. 831-832. (Abstract).

Level Set Models

• M. Eyiyurekli and D. Breen, "Detail-Preserving Level Set Surface Editing and Geometric Texture Transfer," Graphical Models, Vol. 93, September 2017, pp. 39-52. (Abstract).

• M. Eyiyurekli and D. Breen, "Data Structures for Interactive High Resolution Level-Set Surface Editing," Proceedings of Graphics Interface, May 2011, pp. 95-102. (Abstract).

• M. Eyiyurekli and D. Breen, "Interactive Free-Form Level-Set Surface-Editing Operators,'' Computers & Graphics, Vol. 34, No. 5, October 2010, pp. 621-638. (Abstract).

• M. Eyiyurekli, C. Grimm and D. Breen, "Editing Level-Set Models with Sketched Curves," Proceedings of Eurographics/ACM Symposium on Sketch-Based Interfaces and Modeling, August 2009, pp. 45-52. (Abstract).

• D.E. Breen (ed.), Level Set Applications for Visualization, IEEE Visualization 2007 Course #4 Notes, October 2007. (Abstract).

• D.E. Breen (ed.), Level Set Methods for Visualization, IEEE Visualization 2006 Course #4 Notes, October 2006. (Abstract).

• K. Museth, D.E. Breen, R.T. Whitaker, S. Mauch and D. Johnson, "Algorithms for Interactive Editing of Level Set Models," Computer Graphics Forum, Vol. 24, No. 4, December 2005, pp. 821-841. (Abstract).

• O. Nilsson, D. Breen and K. Museth, "Surface Reconstruction Via Contour Metamorphosis: An Eulerian Approach With Lagrangian Particle Tracking," Proceedings of IEEE Visualization 2005 Conference, October 2005, pp. 407-414. (Abstract).

• D.E. Breen (ed.), Level Set and PDE Methods for Visualization, IEEE Visualization 2005 Course #6 Notes, October 2005. (Abstract).

• D. Breen, R. Whitaker, K. Museth and L. Zhukov, "Level Set Segmentation of Biological Volume Datasets," J. Suri (ed.), Handbook of Medical Image Analysis, Volume I: Segmentation Part A, Kluwer, New York, Chapter 8, 2005, pp. 415-478. (Abstract).

• D.E. Breen (ed.), Level Set and PDE Methods for Computer Graphics, SIGGRAPH 2004 Course #27 Notes, August 2004. (Abstract).

• K. Museth, R.T. Whitaker and D.E. Breen, "Editing Geometric Models," Geometric Level Set Methods in Imaging, Vision and Graphics, S. Osher and N Paragios (eds.), Springer, New York, Chapter 23, 2003, pp. 441-460. (Abstract).

• L. Zhukov, K. Museth, D. Breen, R. Whitaker and A. Barr, "Level Set Modeling and Segmentation of DT-MRI Brain Data," Journal of Electronic Imaging, Vol. 12, No. 1, January 2003, pp. 125-133. (Abstract).

• K. Museth, D. Breen, L. Zhukov and R. Whitaker, "Level Set Segmentation From Multiple Non-uniform Volume Datasets," Proceedings of IEEE Visualization 2002 Conference, October 2002, pp. 179-186. (Abstract).

• K. Museth, D.E. Breen, R.T. Whitaker and A.H. Barr, "Level Set Surface Editing Operators," ACM Transactions on Graphics (Proc. SIGGRAPH), Vol. 21, No. 3, July 2002, pp. 330-338. (Abstract).

• D.E. Breen (ed.), Level Set and PDE Methods for Computer Graphics, SIGGRAPH 2002 Course #10 Notes, July 2002. (Abstract).

• D.E. Breen, S. Mauch, R.T. Whitaker and J. Mao, "3D Metamorphosis Between Different Types of Geometric Models," Computer Graphics Forum (Proc. Eurographics 2001), Vol. 20, No. 3, pp. 36-48, September 2001. (Abstract).

• R.T. Whitaker, D.E. Breen, K. Museth and N. Soni, "Segmentation of Biological Volume Datasets Using a Level-Set Framework," Volume Graphics 2001, Springer, Vienna, 2001, pp. 249-263. (Abstract).

• R.T. Whitaker, D.E. Breen, K. Museth and N. Soni, "A Framework for Level Set Segmentation of Volume Datasets", Proceedings of International Workshop on Volume Graphics, June 2001, pp. 159-168. (Abstract).

• D.E. Breen and R.T. Whitaker, "A Level-Set Approach for the Metamorphosis of Solid Models," IEEE Transactions on Visualization and Computer Graphics, Vol. 7, No. 2, pp. 173-192, April-June 2001. (Abstract).

• L. Zhukov, K. Museth, D. Breen and R. Whitaker, "3D Modeling and Segmentation of Diffusion Weighted MRI Data," Proceedings of SPIE Medical Imaging 2001 Conference, February 2001, pp. 401-412. (Abstract).

• R.T. Whitaker and D.E. Breen, "Level-Set Models for the Deformation of Solid Objects," Proceedings of 3rd International Workshop on Implicit Surfaces, Eurographics Association, June 1998, pp. 19-35. (Abstract).

Visualization

• A. Fridman, S. Weber, C. Graff, D.E. Breen, K. Dandekar and M. Kam, "OMAN: A Mobile Ad Hoc Network Design System,'' IEEE Transactions on Mobile Computing, Vol. 11, No. 7, July 2012, pp. 1179 - 1191. (Abstract).

• J. Bradshaw, P.L. Gurian and D. Breen, "ENVision: Visualizing Water Quality from Geographically Distributed Wells," Proceedings of 11th IASTED International Conference on Computer Graphics and Imaging, February 2010, paper 679-100. (Abstract).

• J. Bradshaw, P.L. Gurian, A. Kumar, D. Breen, "Spatial Trends Shed Light on Arsenic Concentrations," OpFlow, Vol. 36, No. 1, pp. 18-21, January 2010. (Abstract).

• J. Bradshaw, P. Gurian, A. Kumar and D. Breen "Spatial Trends in Groundwater Arsenic Concentrations," Proceedings of AWWA Annual Conference and Exhibition, June 2009. (Abstract).

• D. Hennessey, D. Brooks, A. Fridman and D. Breen, "A Simplification Algorithm for Visualizing the Structure of Complex Graphs," Proceedings of 12th International Conference on Information Visualisation, July 2008, pp. 619 - 629. (Abstract).

• A. Fridman, D. Hennessey, D. Breen, S. Weber and M. Kam, "Visualization of Resource Allocation in Large-Scale Mobile Ad Hoc Networks," Advances in Visual Computing (Proc. International Symposium on Visual Computing), LNCS 4841, November 2007, pp. 554 - 563. (Abstract).

• D.E. Breen (ed.), Level Set Applications for Visualization, IEEE Visualization 2007 Course #4 Notes, October 2007. (Abstract).

• D.E. Breen (ed.), Level Set Methods for Visualization, IEEE Visualization 2006 Course #4 Notes, October 2006. (Abstract).

• D.E. Breen (ed.), Level Set and PDE Methods for Visualization, IEEE Visualization 2005 Course #6 Notes, October 2005. (Abstract).

• D. Breen, A. Heirich and A. Koning (eds.), Proceedings of 2001 Symposium on Parallel and Large-Data Visualization and Graphics, ACM SIGGRAPH, 2001.

• S. Lombeyda, L. Moll, M. Shand, D. Breen and A. Heirich, "Scalable Interactive Volume Rendering Using Off-the-shelf Components," Proceedings of 2001 Symposium on Parallel and Large-Data Visualization and Graphics, October 2001, pp. 115-121. (Abstract).

• D.E. Breen and P.H. Getto, "Object-Oriented Visualization Tools," Proceedings of Electronic Imaging East Conference, October 1989, pp. 541-545. (Abstract).

Volume Segmentation

• D. Breen, R. Whitaker, K. Museth and L. Zhukov, "Level Set Segmentation of Biological Volume Datasets," J. Suri (ed.), Handbook of Medical Image Analysis, Volume I: Segmentation Part A, Kluwer, New York, Chapter 8, 2005, pp. 415-478. (Abstract).

• L. Zhukov, K. Museth, D. Breen, R. Whitaker and A. Barr, "Level Set Modeling and Segmentation of DT-MRI Brain Data," Journal of Electronic Imaging, Vol. 12, No. 1, January 2003, pp. 125-133. (Abstract).

• K. Museth, D. Breen, L. Zhukov and R. Whitaker, "Level Set Segmentation From Multiple Non-uniform Volume Datasets," Proceedings of IEEE Visualization 2002 Conference, October 2002, pp. 179-186. (Abstract).

• L. Zhukov, Z. Bao, I. Guskov, J. Wood and D. Breen, "Dynamic Deformable Models for 3D MRI Heart Segmentation," Proceedings of SPIE Medical Imaging 2002 Conference, February 2002, pp. 1398-1405. (Abstract).

• R.T. Whitaker, D.E. Breen, K. Museth and N. Soni, "Segmentation of Biological Volume Datasets Using a Level Set Framework," Volume Graphics 2001, Springer, Vienna, 2001, pp. 249-263. (Abstract).

• R.T. Whitaker, D.E. Breen, K. Museth and N. Soni, "A Framework for Level Set Segmentation of Volume Datasets", Proceedings of International Workshop on Volume Graphics, June 2001, pp. 159-168. (Abstract).

• L. Zhukov, K. Museth, D. Breen and R. Whitaker, "3D Modeling and Segmentation of Diffusion Weighted MRI Data," Proceedings of SPIE Medical Imaging 2001 Conference, February 2001, pp. 401-412. (Abstract).

• J.V. Miller, D.E. Breen, W.E. Lorensen, R.M. O'Bara and M.J. Wozny, "Geometrically Deformed Models: A Method for Extracting Closed Geometric Models from Volume Data," Proceedings of SIGGRAPH '91 Conference, pp. 217-226. (Abstract).

• J.V. Miller, D.E. Breen and M.J. Wozny, "Extracting Geometric Models Through Constraint Minimization," Proceedings of Visualization '90 Conference (San Francisco, CA, October 1990) pp. 74-82. (Abstract).

Augmented Reality

• D. Koller, G. Klinker, E. Rose, D.E. Breen, R.T. Whitaker and M. Tuceryan "Real-time Vision-Based Camera Tracking for Augmented Reality Applications," Proceedings of ACM Symposium on Virtual Reality Software and Technology (VRST '97), Lausanne, Switzerland, September 1997, pp. 87-94. (Abstract)

• D. Koller, G. Klinker, E. Rose, D.E. Breen, R.T. Whitaker and M. Tuceryan "Automated Camera Calibration and 3D Egomotion Estimation for Augmented Reality," Proceedings of 7th International Conference on Computer Analysis of Images and Patterns (CAIP '97), Kiel, Germany, September 1997, pp. 109-206. (Abstract)

• G. Klinker, K. Ahlers, D. Breen, P.-Y. Chevalier, C. Crampton, D. Greer, D. Koller, A. Kramer, E. Rose, M. Tuceryan and R. Whitaker, "Confluence of Computer Vision and Interactive Graphics for Augmented Reality," , Presence: Teleoperations and Virtual Environments, Vol. 6, No. 4, pp. 433-451, August 1997. (Abstract).

• D.E. Breen, R.T. Whitaker, E. Rose and M. Tuceryan, "Interactive Occlusion and Automatic Object Placement for Augmented Reality," Computer Graphics Forum (Proc. Eurographics '96), Vol. 15, No. 3, pp. 11-22, August 1996. (Abstract).

• M. Tuceryan, D.S. Greer, R.T. Whitaker, D.E. Breen, C. Crampton, E. Rose and K.H. Ahlers, "Calibration Requirements and Procedures for a Monitor-Based Augmented Reality System," IEEE Transactions on Visualization and Computer Graphics, Vol. 1, No. 3, pp. 255-273, September 1995. (Abstract).

• K.H. Ahlers, A. Kramer, D.E. Breen, P.-Y. Chevalier, C. Crampton, E. Rose, M. Tuceryan, R.T. Whitaker and D.S. Greer, "Distributed Augmented Reality for Collaborative Design Applications," Computer Graphics Forum (Proc. Eurographics '95), Vol. 14, No. 3, pp. 3-14, August 1995. (Abstract).

• R.T. Whitaker, C. Crampton, D.E. Breen, M. Tuceryan and E. Rose, "Object Calibration for Augmented Reality," Computer Graphics Forum (Proc. Eurographics '95), Vol. 14, No. 3, pp. 15-27, August 1995. (Abstract).

• E. Rose, D.E. Breen, K.H. Ahlers, C. Crampton, M. Tuceryan, R.T. Whitaker and D.S. Greer, "Annotating Real-World Objects Using Augmented Reality," Computer Graphics: Developments in Virtual Environments (CG International '95 Conference Proceedings), eds. R.A. Earnshaw and J.A. Vince (Academic Press, London, June 1995) pp. 357-370. (Abstract).

• K.H. Ahlers, D.E. Breen, C. Crampton, E. Rose, M. Tuceryan, R.T. Whitaker and D.S. Greer, "An Augmented Vision System for Industrial Applications," Telemanipulator and Telepresence Technologies, SPIE Proceedings, Vol. 2351, pp. 345-359, October 1994. (Abstract).

Computer Animation

• D. Breen and M. Ling (eds.), Proceedings of 2003 ACM SIGGRAPH / Eurographics Symposium on Computer Animation, Eurographics Association, 2003.

• D.E. Breen, "Cost Minimization for Animated Geometric Models in Computer Graphics," Journal of Visualization and Computer Animation, Vol. 8, No. 4, 1997, pp. 201-220. (Abstract).

• P.H. Getto and D.E. Breen, "An Object-Oriented Architecture for a Computer Animation System," The Visual Computer, Vol. 6, No. 2, March 1990, pp. 79-92. (Abstract).

• D.E. Breen, P.H. Getto and A.A. Apodaca, "Object-Oriented Programming in a Conventional Programming Environment," Proceedings of 13th Annual International Computer Software and Applications Conference, September 1989, pp. 334-343. (Abstract).

• D.E. Breen and V. Kuehn, "Message-Based Object-Oriented Interaction Modeling," Proceedings of Eurographics '89 Conference, pp. 489-503. (Abstract).

• D.E. Breen, "Choreographing Goal-Oriented Motion Using Cost Functions," Proceedings of Computer Animation '89 Conference, pp. 141-151. (Abstract).

• D.E. Breen and M.J. Wozny, "Message-Based Choreography for Computer Animation," Proceedings of Computer Animation '89 Conference, pp. 69-82. (Abstract).

• D.E. Breen, P.H. Getto, A.A. Apodaca, D.G. Schmidt and B.D. Sarachan, "The Clockworks: An Object-Oriented Computer Animation System," Proceedings of Eurographics '87 Conference, pp. 275-282. (Abstract).